Many genomic processes are regulated by torsional stress, resulting in a range of supercoiled DNA structures. In order to understand the effect of such structures on protein binding and activity, several single-molecule techniques are often employed. These include magnetic, micro-pipette and angular optical tweezers. However, two factors can limit the study of DNA-protein interactions on supercoiled DNA. First, it is challenging to combine DNA-torque control with fluorescence microscopy. Second, the DNA substrate is typically tethered to a surface, hindering rapid buffer exchange.

Additional Metadata
Publisher Elsevier/ Cell Press
Persistent URL dx.doi.org/10.1016/j.bpj.2018.11.1182
Journal Biophys. J.
Citation
King, G.A, Burla, F, Peterman, E.J.G, & Wuite, G.J.L. (2019). A Versatile Method to Quantify DNA-Protein Interactions on Negatively Supercoiled DNA. In Biophys. J. (Vol. 116, pp. 214a–214a). Elsevier/ Cell Press. doi:10.1016/j.bpj.2018.11.1182