AMOLF Institutional Repository: AMOLF Institutional Repository

Velocity map imaging using an in-vacuum pixel detector Article

Rev. Sci. Instrum., 80(Article number: 103105), 1-7.

G. Gademann, Y. Huismans (Ymkje), A. Gijsbertsen (Arjan), J.H. Jungmann (Julia), J. Visschers and M.J.J. Vrakking

October 2009
Complete response characterization of ultrafast linear photonic devices Article

Opt. Lett., 3418-3420.

T. Kampfrath, D.M. Beggs, T.F. Krauss and L.K. Kuipers (Kobus)

October 2009
Probing the magnetic field of light at optical frequencies Article

Science, 550-553.

M. Burresi, D. van Oosten, T. Kampfrath, H. Schoenmaker (Hinco), R. Heideman, A. Leinse and L.K. Kuipers (Kobus)

October 2009
Observation of multifractality in Anderson localization of ultrasound Article

Phys. Rev. Lett., 103(Article number: 155703), 1-4.

S. Faez (Sanli), A. Strybulevych, J.H. Page, A. Lagendijk and B.A. van Tiggelen

October 2009
Optical anisotropic diffusion : new model systems and theoretical modeling Article

J. Biomed. Opt., 14(Article number: 54036), 1-9.

P.M. Johnson and A. Lagendijk

October 2009
Orientation-dependent optical-polarization properties of single quantum dots in nanowires Article

Small, 2134-2138.

M.H.M. van Weert, N. Akopian, F. Kelkensberg, U. Perinetti, M.P. van Kouwen, J. Gómez Rivas (Jaime), M.T. Borgström, R. Algra, M.A. Verheijen, E.P.A.M. Bakkers (Erik), et al. V. Zwiller

October 2009
Nanoscale investigation of light-matter interactions mediated by magnetic and electric coupling Dissertation

M. Burresi

September 2009
Floating membranes : molecular structure and orientation at the water-lipid interface Dissertation

M. Sovago

September 2009
Ultrafast spectroscopy of model biological membranes Dissertation

A. Ghosh

September 2009
Hydrophobic solvation : a 2D IR spectroscopic inquest Article

Acc. Chem. Res., 42(9), 1229-1238.

A.A. Bakulin (Artem), C. Liang, T.L.C. Jansen (Thomas), D.A. Wiersma, H.J. Bakker (Huib) and M.S. Pshenichnikov

September 2009
Polarization, microscopic origin and mode structure of luminescence and lasing from single ZnO nanowires Article

Nano Lett., 9(10), 3515-3520.

H.-Y. Li, S. Rühle, R. Khedou, A.F. Koenderink (Femius) and Daniël A. Vanmaekelbergh

September 2009
An active biopolymer network controlled by molecular motors Article

PNAS, 106(36), 15192-15197.

G.H. Koenderink (Gijsje), Z. Dogic, F. Nakamura, P.M. Bendix, F.C. MacKintosh (Fred), J.H. Hartwig, T.P. Stossel and D.A. Weitz

September 2009
Water als ultrasnelle achtbaan voor protonen Article

NTvN, 329-332.

K.J. Tielrooij, R.L.A. Timmer (Rutger), H.J. Bakker (Huib) and M. Bonn (Mischa)

September 2009
Assessment of carrier multiplication efficiency in bulk PbSe and PbS Article

Nature Phys., 811-814.

J.J.H. Pijpers, R. Ulbricht, K.J. Tielrooij, A. Osherov, Y. Golan, C. Delerue, G. Allan and M. Bonn (Mischa)

September 2009
Molecular dissociative ionization and wave packet dynamics studied using two-colour XUV+IR pump-probe spectroscopy Article

Phys. Rev. Lett., 103(Article number: 123005), 1-4.

F. Kelkensberg, C. Lefebvre, W. Siu, O. Ghafur, T.T. Nguyen-Dang, O. Atabek, A. Keller, V. Serov, P. Johnsson, M. Swoboda, et al. G. Sansone, F. Ferrari, M. Nisoli, F. Lépine, M.J.J. Vrakking

September 2009
Intracellular transport by active diffusion Article

Trends Cell Biol., 423-427.

C.P. Brangwynne, G.H. Koenderink (Gijsje) and D.A. Weitz

September 2009
Attosecond control of electron dynamics in carbon monoxide Article

Phys. Rev. Lett., 103(Article number: 103002), 1-4.

I. Znakovskaya, P. von den Hoff, S.S. Zherebtsov, A. Wirth, O. Herrwerth, M.J.J. Vrakking, R. de Vivie-Riedle and M.F. Kling

September 2009
Interface-specific ultrafast two-dimensional vibrational spectroscopy Article

Acc. Chem. Res., 1332-1342.

J. Bredenbeck, A. Ghosh, H.-K. Nienhuys and M. Bonn (Mischa)

September 2009
Mesoscopic statistical properties of multistep enzyme-mediated reactions Article

IET Syst. Biol., 429-437.

W.H. de Ronde, B.C. Daniels, A. Mugler (Andrew), N.A. Sinitsyn and I. Nemenman

September 2009
Fast and automated large-area imaging MALDI mass spectrometry in microprobe and microscope mode Article

Int. J. Mass Spectrom., 285(1-2), 19-25.

L.A. Klerk, A.F.M. Altelaar, M. Froesch, L.A. McDonnell and R.M.A. Heeren (Ron)

August 2009
Photoswitchable molecular wires : From a sexithiophene to a dithienylethene and back Article

Chem. Phys. Lett., 137-139.

M.T.W. Milder, J. Areephong, B.L. Feringa, W.R. Browne and J. Herek

August 2009
Mid-infrared strong field ionization angular distributions Article

Laser Phys., 1574-1580.

F. Catoire, C.I. Blaga, E. Sistrunk, H.G. Muller, Pierre Agostini and L.F. DiMauro

August 2009
Fiefty-years of Anderson localization Article

Phys. Today, 24-29.

A. Lagendijk, B.A. van Tiggelen and D.S. Wiersma

August 2009
Illuminating molecules from within : A Viewpoint on: Attosecond photoelectron microscopy of H2+ Article

Physics, 2(Article number: 72), 1-3.

M.J.J. Vrakking

August 2009
Electronic movies Article

Nature, 960-961.

M.J.J. Vrakking

August 2009
Designing periodic arrays of metal nanoparticles for light-trapping applications in solar cells Article

Appl. Phys. Lett., 95(Article number: 53115), 1-3.

S. Mokkapati, F.J. Beck, A. Polman (Albert) and K.R. Catchpole

August 2009
Correlating MALDI and SIMS imaging mass spectrometric datasets of biological tissue surfaces Article

Surf. Interface Anal., 675-685.

G.B. Eijkel (Gert), B. Kükrer-Kaletas, I.M. van der Wiel, J.M. Kros, Theo M. Luider and R.M.A. Heeren (Ron)

August 2009
Differential bacterial surface display of peptides by the transmembrane domain of OmpA Article

PLoS One, 4(Article number: 6739), 1-12.

G.S. Verhoeven, S. Alexeeva, A.M. Dogterom (Marileen) and T. den Blaauwen

August 2009
Electrodynamic calculations of spontaneous emission coupled to metal nanostructures of arbitrary shape : nanoantenna-enhanced fluorescence Article

J. Opt. Soc. Am. B, 1569-1577.

V. Giannini, J.A Sánchez-Gil, O.L. Muskens and J. Gómez Rivas (Jaime)

August 2009
Modal decomposition of surface-plasmon whispering gallery resonators Article

Nano Lett., 3147-3150.

Ernst Jan R. Vesseur, F.J. García de Abajo (Javier) and A. Polman (Albert)

August 2009
Field enhancement in metallic subwavelength aperture arrays probed by erbium upconversion luminescence Article

Opt. Express, 17(17), 14586-14598.

E. Verhagen (Ewold), L.K. Kuipers (Kobus) and A. Polman (Albert)

August 2009
Controlling fluorescent proteins by manipulating the local density of photonic states In Proceedings

C. Blum, Y. Cesa, Johanna M. van den Broek, A.P. Mosk (Allard), W.L. Vos and V. Subramaniam (Vinod)

July 2009
3D synchrotron x-ray microtomography of paint samples In Proceedings

E.S.B. Ferreira, J.J. Boon, J. van der Horst (Jerre), N.C. Scherrer, F. Marone and M. Stampanoni

July 2009
Mass spectrometry of art and cultural heritage Article

Int. J. Mass Spectrom.

E.S.B. Ferreira, R.M.A. Heeren (Ron), K.-J. van den Berg, C. Maines, K. Sutherland and C. Higgitt

July 2009
Lyapunov instability of rough hard-disk fluids Article

Phys. Rev. E, 80(Article number: 16206), 1-11.

J.A. van Meel and H.A. Posch

July 2009
Phase diagram of Hertzian spheres Article

J. Chem. Phys., 131(Article number: 44514), 1-9.

J.C. Pámies, A. Cacciuto and D. Frenkel

July 2009
Tunable aggregation and luminescence of bis(diarylethene)sexithiophenes Article

J. Phys. Chem. A, 7717-7724.

M.T.W. Milder, J. Herek, J. Areephong, B.L. Feringa and W.R. Browne

July 2009
Dispersion of metal-insulator-metal plasmon polaritons probed by cathodoluminescence imaging spectroscopy Article

Phys. Rev. B, 80(Article number: 33409), 1-4.

Martin Kuttge, W. Cai, F.J. García de Abajo (Javier) and A. Polman (Albert)

July 2009
Revealing evolutionary pathways by fitness landscape reconstruction Article

Crit. Rev. Biochem. Mol. Biol., 169-174.

M. Kogenaru (Manjunatha), M.G.J. de Vos (Marjon) and S.J. Tans (Sander)

July 2009
Varying the effective refractive index to measure optical transport in random media Article

Phys. Rev. Lett., 103(Article number: 53903), 1-4.

S. Faez (Sanli), P.M. Johnson and A. Lagendijk

July 2009
Plasmon dispersion in coaxial waveguides from single-cavity optical transmission measurements Article

Nano Lett., 2832-2837.

R. de Waele, S.P. Burgos, A. Polman (Albert) and H.A. Atwater (Harry)

July 2009
Purcell-factor-enhanced scattering from Si nanocrystals in an optical microcavity Article

Phys. Rev. Lett., 103(Article number: 27406), 1-4.

T.J. Kippenberg (Tobias), A.L. Tchebotareva, J. Kalkman, A. Polman (Albert) and K.J. Vahala

July 2009
Field-free molecular alignment probed by the free electron laser in Hamburg (FLASH) Article

J. Phys. B, 42(Article number: 134017), 1-9.

P. Johnsson, A. Rouzée, W. Siu, Y. Huismans (Ymkje), F. Lépine, Tatiana Marchenko, S. Düsterer, F. Tavella, N. Stojanovic, A. Azima, et al. R. Treusch, M.J.J. Vrakking

July 2009
Direct temperature mass spectrometric study on the depth-dependent compositional gradients of aged triterpenoid varnishes Article

Int. J. Mass Spectrom., 98-107.

C. Theodorakopoulos, J.J. Boon and V. Zafiropulos

July 2009
Analytical mass spectrometry of poly(ethylene glycol) additives in artists acrylic emulsion media, artists paints, and microsamples from acrylic paintings using MALDI-MS and nanospray-ESI-MS Article

Int. J. Mass Spectrom., 72-80.

F.G. Hoogland and J.J. Boon

July 2009
Development of MALDI-MS and nano-ESI-MS methodology for the full identification of poly(ethylene glycol) additives in artists acrylic paints Article

Int. J. Mass Spectrom., 66-71.

F.G. Hoogland and J.J. Boon

July 2009
"Evaluation of the ""added value"" of SIMS : a mass spectrometric and spectroscopic study of an unusual Naples yellow oil paint recontruction" Article

Int. J. Mass Spectrom., 22-34.

K. Keune, J.J. Boon, D. Peggie and C. Higgitt

July 2009
A direct temperature-resolved tandem mass spectrometry study of cholesterol oxidation products in light-aged egg tempera paints with examples from works of art Article

Int. J. Mass Spectrom., 12-21.

O.F. van den Brink, E.S.B. Ferreira, J. van der Horst (Jerre) and J.J. Boon

July 2009
Biomolecular design elements : cortical microtubules and DNA-coated colloids Dissertation

Theory of Biomolecular Matter

S.H. Tindemans (Simon)

June 2009
Controlling light with resonant plasmonic nanostructures Dissertation

Photonic Materials

R. de Waele

June 2009
Force generation at microtubule ends : an in vitro approach to cortical interactions Dissertation

L. Laan (Liedewij)

June 2009
Strong temperature dependence of water reorientation in hydrophobic hydration shells Article

J. Chem. Phys., 130(Article number: 214511), 1-6.

C. Petersen, K.J. Tielrooij and H.J. Bakker (Huib)

June 2009
How grooves reflect and confine surface plasmon polaritons Article

Opt. Express, 17(12), 10385-10392.

Martin Kuttge, F.J. García de Abajo (Javier) and A. Polman (Albert)

June 2009
Arabidopsis cortical microtubules position cellulose synthase delivery to the plasma membrane and interact with cellulose synthase trafficking compartments Article

Nature Cell Biol., 797-806.

R. Gutierrez (Ryan), J.J. Lindeboom (Jelmer), A.R. Paredez (Alex), A.M.C. Emons (Anne Mie) and D.W. Ehrhardt (David)

June 2009
Ultrafast rerouting of light via slow modes in a nanophotonic directional coupler Article

Appl. Phys. Lett., 94(Article number: 241119), 1-3.

T. Kampfrath, D.M. Beggs, T.P. White, M. Burresi, D. van Oosten, T.F. Krauss and L.K. Kuipers (Kobus)

June 2009
Tunable light trapping for solar cells using localised surface plasmons Article

J. Appl. Phys., 105(Article number: 114310), 1-7.

F.J. Beck, A. Polman (Albert) and K.R. Catchpole

June 2009
Imaging mass spectrometry : hype or hope? Article

J. Am. Soc. Mass Spectrom., 1006-1014.

R.M.A. Heeren (Ron), D.F. Smith (Donald), J. Stauber, B. Kükrer-Kaletas and L. MacAleese (Luke)

June 2009
Optical methods for the study of dynamics in biological membrane models Article

Surf. Sci., 1945-1952.

M. Bonn (Mischa) and R.K. Campen

June 2009
Internal dynamics of supercoiled DNA molecules Article

Biophys. J., 4951-4955.

T. Kalkbrenner, A. Arnold and S.J. Tans (Sander)

June 2009
Local and dynamic properties of light interacting with subwavelength holes Dissertation

J.C. Prangsma

May 2009
Spontaneous emission of near-infrared quantum dots controlled with photonic crystals Dissertation

B.H. Husken

May 2009
The influence of fabrication deviations on the photonic band gap of three-dimensional inverse woodpile nanostructures Article

J. Appl. Phys., 105(Article number: 93108), 1-10.

L.A. Woldering, A.P. Mosk (Allard), R.W. Tjerkstra and W.L. Vos

May 2009
Strong-field photoionization revisited Article

Nature Phys., 5(5), 335-338.

C.I. Blaga, F. Catoire, P. Colosimo, G.G. Paulus, H.G. Muller, Pierre Agostini and L.F. DiMauro

May 2009
Quantum control experiment reveals solvation-induced decoherence Article

PNAS, 106(19), 7714-7717.

P. van der Walle, M.T.W. Milder, L.K. Kuipers (Kobus) and J. Herek

May 2009
Hydrogen bond fluctuations of the hydration shell of the bromide anion Article

J. Phys. Chem. A, 113(21), 6104-6110.

R.L.A. Timmer (Rutger) and H.J. Bakker (Huib)

May 2009
DNA looping provides stability and robustness to the bacteriophage λ switch Article

PNAS, 106(20), 8101-8106.

M.J. Morelli, P.R. ten Wolde (Pieter Rein) and R.J. Allen

May 2009
Waterlike thermodynamic anomalies in a repulsive-shoulder potential system Article

Phys. Rev. E, 79(Article number: 51202), 1-6.

N.V. Gribova, Y.D. Fomin, D. Frenkel and V.N. Ryzhov

May 2009
Distance-dependent proton transfer along water wires connecting acid-base pairs Article

J. Phys. Chem. A, 6599-6606.

M.J. Cox, R.L.A. Timmer (Rutger), H.J. Bakker (Huib), S. Park and N. Agmon

May 2009
Toward digital staining using imaging mass spectrometry and random forests Article

J. Proteome Res., 3558-3567.

M. Hanselmann, U. Köthe, M. Kirchner, B.Y. Renard, E.R. Amstalden van Hove, K. Glunde, R.M.A. Heeren (Ron) and F.A. Hamprecht

May 2009
Structural characterization of alpha-lactalbumin nanotubes Article

Soft Matter, 2020-2026.

J.F. Graveland-Bikker, R.I. Koning, H.K. Koerten, R.B.J. Geels, R.M.A. Heeren (Ron) and C.G. de Kruif

May 2009
Observation of spatial quantum correlations induced by multiple scattering of nonclassical light Article

Phys. Rev. Lett., 102(Article number: 193901), 1-4.

S. Smolka, A. Huck, U.L. Andersen, A. Lagendijk and P. Lodahl

May 2009
Efficiënt licht invangen met behulp van nanogestructureerde oppervlakken Article

NTvN, 176-179.

S.L. Diedenhofen, R. Algra, E.P.A.M. Bakkers (Erik) and J. Gómez Rivas (Jaime)

May 2009
Broadband sensitive pump-probe setup for ultrafast optical switching of photonic nanostructures and semiconductors Article

Rev. Sci. Instrum., 80(Article number: 73104), 1-9.

T.G. Euser, P.J. Harding and W.L. Vos

May 2009
Mutual information between input and output trajectories of biochemical networks Article

Phys. Rev. Lett., 102(Article number: 218101), 1-4.

F. Tostevin (Filipe) and P.R. ten Wolde (Pieter Rein)

May 2009
Measuring molecular reorientation at liquid surfaces with time-resolved sum-frequency spectroscopy : a theoretical framework Article

J. Phys. Chem. B, 7564-7573.

H.-K. Nienhuys and M. Bonn (Mischa)

May 2009
Structure dynamics of the proton in liquid water probed with terahertz time-domain spectroscopy Article

Phys. Rev. Lett., 102(Article number: 198303), 1-4.

K.J. Tielrooij, R.L.A. Timmer (Rutger), H.J. Bakker (Huib) and M. Bonn (Mischa)

May 2009
Fabry-Pérot resonators for surface plasmon polaritons probed by cathodoluminescence Article

Appl. Phys. Lett., 94(Article number: 183104), 1-3.

Martin Kuttge, Ernst Jan R. Vesseur and A. Polman (Albert)

May 2009
Direct observation of type 1 fimbrial switching Article

EMBO Rep., 527-532.

A.M. Adiciptaningrum, I.C. Blomfield and S.J. Tans (Sander)

May 2009
Nanowire plasmon excitation by adiabatic mode transformation Article

Phys. Rev. Lett., 102(Article number: 203904), 1-4.

E. Verhagen (Ewold), M. Spasenović, A. Polman (Albert) and L.K. Kuipers (Kobus)

May 2009
Differential affinity and catalytic activity of CheZ in E. coli chemotaxis Article

PLoS Comput. Biol., 5(Article number: 1000378), 1-13.

S.B. van Albada and P.R. ten Wolde (Pieter Rein)

May 2009
Sample preparation issues for tissue imaging by imaging MS Article

Proteomics, 2622-2633.

B. Kükrer-Kaletas, I.M. van der Wiel, J. Stauber, L. Dekker, C. Güzel, Theo M. Luider and R.M.A. Heeren (Ron)

May 2009
Rheological characterization of the nucleus pulposus: implications for functional replacement Article

J. Orthop. Res., 27(5), 620-626.

J.L. Bron, G.H. Koenderink (Gijsje), V. Everts and T.H. Smit

May 2009
Lyomesophases of C3-symmetrical bipyridine-based discs in alkanes: an X-ray diffraction study Article

Langmuir, 25(15), 8794-8801.

R. Martín-Rapún, D. Byelov (Dimitry), A.R.A. Palmans, W.H. de Jeu and E.W. Meijer

April 2009
Imaging of chemical and physical state of individual cellular lipid droplets using multiplex CARS microscopy Article

J. Raman Spectrosc., 40, SI(7), 763-769.

M. Bonn (Mischa), M. Müller (Michiel), H.A. Rinia and K.N.J. Burger

April 2009
Ion-ing out the details Article

Nature Chem., 24-25.

H.J. Bakker (Huib)

April 2009
Crystallization-induced order in polystyrene-poly(ethylene oxide) metallo-supramolecular diblock copolymer Article

Polymer, 2149-2153.

M. Al-Hussein and W.H. de Jeu

April 2009
Observation of photoactive yellow protein anchored to a modified Au(111) surface by scanning tunneling microscopy Article

Chem. Phys. Lett., 113-117.

I.I. Rzeznicka, G.W.H. Wurpel, M. Bonn (Mischa), M.A. van der Horst, K.J. Hellingwerf, S. Matsunaga, T. Yamada and M. Kawai

April 2009
Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei Article

Nucleic Acids Res., 3558-3568.

S. de Nooijer, J. Wellink, B.M. Mulder (Bela) and T. Bisseling

April 2009
Accurate calculation of the local density of optical states in inverse-opal photonic crystals Article

J. Opt. Soc. Am. B, 987-997.

I.S. Nikolaev, W.L. Vos and A.F. Koenderink (Femius)

April 2009
Shaping the fluorescent emission by lattice resonances in plasmonic crystals of nanoantennas Article

Phys. Rev. Lett., 102(Article number: 146807), 1-4.

G. Vecchi, V. Giannini and J. Gómez Rivas (Jaime)

April 2009
Force generation by microtubule bundles Article

Biophys. Rev. Lett., 33-43.

J. Husson, L. Laan (Liedewij) and A.M. Dogterom (Marileen)

April 2009
Manipulation of the local density of photonic states to elucidate fluorescent protein emission rates Article

Phys. Chem. Chem. Phys., 2525-2531.

Y. Cesa, C. Blum, Johanna M. van den Broek, A.P. Mosk (Allard), W.L. Vos and V. Subramaniam (Vinod)

April 2009
Identification of competing ultrafast all-optical switching mechanisms in Si woodpile photonic crystals Article

J. Opt. Soc. Am. B, 610-619.

P.J. Harding, T.G. Euser and W.L. Vos

April 2009
Impulsive orientation and alignment of quantum-state-selected NO molecules Article

Nature Phys., 289-293.

O. Ghafur, A. Rouzée, A. Gijsbertsen (Arjan), W. Siu, S. Stolte and M.J.J. Vrakking

April 2009
Destabilization of the hydrogen-bond structure of water by the osmolyte trimethylamine-N-oxide Article

J. Phys. Chem. B, 4038-4044.

Y.L.A. Rezus (Yves) and H.J. Bakker (Huib)

April 2009
Cathodoluminescence plasmon microscopy Dissertation

Photonic Materials

Martin Kuttge

March 2009
Feature visualization on large scale imaging mass spectrometry data Dissertation

A. Broersen

March 2009
Homogeneous bubble nucleation driven by local hot spots: a molecular dynamics study Article

J. Phys. Chem. B, 113(12), 3776-3784.

Z.-J. Wang, C. Valeriani and D. Frenkel

March 2009
A velocity map imaging detector with an integrated gas injection system Article

Rev. Sci. Instrum., 80(3, Article number: 33110), 1-6.

O. Ghafur, W. Siu, P. Johnsson, M.F. Kling, M. Drescher and M.J.J. Vrakking

March 2009
Mammalian end binding proteins control persistent microtubule growth Article

J. Cell Biol., 184(5), 691-706.

Y. Komarova, C.O. de Groot, I. Grigoriev (Ilya), S. Montenegro Gouveia, E.L. Munteanu, J.M. Schober, S. Honnappa, R.M. Buey, C.C. Hoogenraad (Casper), A.M. Dogterom (Marileen), et al. A. Akhmanova (Anna)

March 2009

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